Slavov lab | Quantitative Biology
Supporting  Information
Coordination among metabolism, cell growth and division

Reference Conversion. Reproducibility

Scatter Plots of GRR Exponents/Slopes

Below is an array of interactive scatter plots. Each plot corresponds to a set of conditions defined by the carbon sources (CS) and the limiting nutrients (Lim) indicated on the top and left. For each set of conditions (plot), the genes whose expression levels are explained well by an exponential model are depicted as black circles. In the corner of each quadrant there are two links characterizing the set of genes whose exponents reside in the quadrant, set A:
  1. Red: significantly enriched GO terms for gene set A;
  2. Green: transcription factors (TFs) likely to regulate genes from set A as determined by the significance of the overlap between gene set A and ChIP-on-chip determined TF targets.


Natural Limitations on Glucose and Ethanol Carbon Source


CS: Eth
Lim: N

CS: Eth
Lim: Phos

CS: Glu
Lim: Glu

CS: Glu
Lim: N

CS: Glu
Lim: Phos
CS: Eth
Lim: Eth
CS: Eth
Lim: N
CS: Eth
Lim: Phos
CS: Glu
Lim: Glu
CS: Glu
Lim: N


All Limitations


CS: Eth
Lim: N

CS: Eth
Lim: Phos

CS: Glu
Lim: Glu

CS: Glu
Lim: N

CS: Glu
Lim: Phos

CS: Glu
Lim: Sul

CS: Glu
Lim: Leu

CS: Glu
Lim: Ura
CS: Eth
Lim: Eth
CS: Eth
Lim: N
CS: Eth
Lim: Phos
CS: Glu
Lim: Glu
CS: Glu
Lim: N
CS: Glu
Lim: Phos
CS: Glu
Lim: Sul
CS: Glu
Lim: Leu